[SLIM-Curve] sdt file reading error in SLIM curve

[Curtis Rueden]

Hi Doogie,

> It works.

Great, glad to hear it.

Regards,
Curtis

On Tue, Jun 30, 2015 at 1:52 PM, Oh, Doogie <doh at cgr.harvard.edu> wrote:

>  Hi Abdul,
>
>
>
> It works.
>
> Thanks
>
>
>
> Doogie
>
>
>
> *From:* Abdul Kader Sagar [mailto:abdul.kader.sagar at gmail.com]
> *Sent:* Monday, June 29, 2015 3:15 PM
> *To:* Curtis Rueden
> *Cc:* Oh, Doogie; slim-curve at imagej.net
>
> *Subject:* Re: sdt file reading error in SLIM curve
>
>
>
> Hi Curtis,
>
>
>
> For now the best workaround would be using SPCM to decompress the image.
> In FIFO mode, the images are compressed to save space, even though they are
> both *.SDT format.
>
>
>
> For converting(using SPCM), go to File-> Convert-> SDT Files
>
>
>
> In destination file format, select SDT unzipped(I have attached a
> screenshot for clarification). Let me know if this was helpful.
>
>
>
> Thanks
>
>
>     Best regards,
>
> Md Abdul Kader Sagar
>
>
>
> Graduate Student
> *Department of Electrical and Computer Engineering*
>
>
>
> Research Assistant
>
> *Laboratory of Optical and Computational Instrumentation (LOCI)*
>
>
>
> *University of Wisconsin-Madison*
>
>
>
> LinkedIn: https://www.linkedin.com/in/aksagar
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.linkedin.com_in_aksagar&d=BQMFaQ&c=WO-RGvefibhHBZq3fL85hQ&r=EjWRw7WikK8RBbnVnPcDS_stCYeOYvqzfywQwv_FTEo&m=3RGvMo2Wd57bUwZEZbx2JiGs9KAK2rhBghobdZVlCms&s=upmcgGT85yHFDn8Fp8QCJtaj6-eMQ0FdQDis1wCrzRM&e=>
>
> Web: http://loci.wisc.edu/people/md-abdul-kader-sagar
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__loci.wisc.edu_people_md-2Dabdul-2Dkader-2Dsagar&d=BQMFaQ&c=WO-RGvefibhHBZq3fL85hQ&r=EjWRw7WikK8RBbnVnPcDS_stCYeOYvqzfywQwv_FTEo&m=3RGvMo2Wd57bUwZEZbx2JiGs9KAK2rhBghobdZVlCms&s=903P6b6QCuRVvSnnImj0PaHYhaB_7VFg6ZiguVjSutk&e=>
> Cell: +1 608 572 9299
> *Email*: abdul.kader.sagar at gmail.com
>  msagar at wisc.edu
>
>
>
> On Mon, Jun 29, 2015 at 1:57 PM, Curtis Rueden < ctrueden at wisc.edu> wrote:
>
>  Hi Doogie,
>
>
>
> > I am wondering whether you are working on it. Or you got in troubles.
>
> > If you have any suggestions such as converting sdt file into other
>
> > format, please let me know.
>
>
>
> I'm CCing the slim-curve mailing list, which is the best place to discuss
> these issues.
>
>
>
> Unfortunately, I have not had any significant time to work on the SDT
> issues. However, I did pass along your issue to Sagar (CCed), the current
> maintainer of the SLIM Curve plugin for ImageJ.
>
>
>
> Your image appears to be a FIFO image, which is currently not supported in
> ImageJ or SCIFIO. But Sagar is actively working on adding support for FIFO
> images to our software, since we have some of those here in our lab as well.
>
>
>
> Sagar, please let me know if you need any guidance or support on this
> project. Or if you have any workarounds that Doogie can use in the meantime.
>
>
>
> Regards,
>
> Curtis
>
>
>
> On Sat, Jun 27, 2015 at 11:00 PM, Oh, Doogie < doh at cgr.harvard.edu> wrote:
>
>  Hi Curtis,
>
>
>
> I am wondering whether you are working on it. Or you got in troubles. If
> you have any suggestions such as converting sdt file into other format,
> please let me know.
>
>
>
> Regards,
>
> Doogie
>
>
>
> *From:*  ctrueden.wisc at gmail.com [mailto: ctrueden.wisc at gmail.com] *On
> Behalf Of *Curtis Rueden
> *Sent:* Wednesday, April 22, 2015 2:03 PM
> *To:* Oh, Doogie
> *Cc:*  slim-curve at imagej.net
> *Subject:* Re: sdt file reading error in SLIM curve
>
>
>
> Hi Doogie,
>
>
>
> > Library not on path Unable to load library 'slim-curve-1.0-SNAPSHOT'
>
>
>
> Thanks for the bug report. I am able to reproduce this issue on my OS X
> system.
>
>
>
> I will investigate further and reply back when there is a fix.
>
>
>
> Regards,
>
> Curtis
>
>
>
> On Fri, Apr 17, 2015 at 1:25 PM, Oh, Doogie < doh at cgr.harvard.edu> wrote:
>
>  Dear Curtis,
>
>
>
> I am trying to load sdt file, but couldn’t get the correct image. Could
> you diagnose the problems? I attach the sdt file and the loading results.
>
>
>
> Best regards,
>
> Doogie Oh, Ph. D
>
> Department of Molecular and Cellular Biology
>
> Applied Physics
>
> Harvard University
>
> 52 Oxford st,
>
> Northwest lab building, Room 358
>
> Cambridge, MA
>
> 02138
>
>
>
>
>
>
>
>
>
>
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