[SLIM-Curve] sdt file reading error in SLIM curve

[Abdul Kader Sagar]

Hi Curtis,

For now the best workaround would be using SPCM to decompress the image. In
FIFO mode, the images are compressed to save space, even though they are
both *.SDT format.

For converting(using SPCM), go to File-> Convert-> SDT Files

In destination file format, select SDT unzipped(I have attached a
screenshot for clarification). Let me know if this was helpful.

Thanks

Best regards,
Md Abdul Kader Sagar

Graduate Student
*Department of Electrical and Computer Engineering*

Research Assistant
*Laboratory of Optical and Computational Instrumentation (LOCI)*

*University of Wisconsin-Madison*

LinkedIn: https://www.linkedin.com/in/aksagar
Web: http://loci.wisc.edu/people/md-abdul-kader-sagar
Cell: +1 608 572 9299
*Email*: abdul.kader.sagar at gmail.com
 msagar at wisc.edu

On Mon, Jun 29, 2015 at 1:57 PM, Curtis Rueden < ctrueden at wisc.edu> wrote:

> Hi Doogie,
>
> > I am wondering whether you are working on it. Or you got in troubles.
> > If you have any suggestions such as converting sdt file into other
> > format, please let me know.
>
> I'm CCing the slim-curve mailing list, which is the best place to discuss
> these issues.
>
> Unfortunately, I have not had any significant time to work on the SDT
> issues. However, I did pass along your issue to Sagar (CCed), the current
> maintainer of the SLIM Curve plugin for ImageJ.
>
> Your image appears to be a FIFO image, which is currently not supported in
> ImageJ or SCIFIO. But Sagar is actively working on adding support for FIFO
> images to our software, since we have some of those here in our lab as well.
>
> Sagar, please let me know if you need any guidance or support on this
> project. Or if you have any workarounds that Doogie can use in the meantime.
>
> Regards,
> Curtis
>
> On Sat, Jun 27, 2015 at 11:00 PM, Oh, Doogie < doh at cgr.harvard.edu> wrote:
>
>>  Hi Curtis,
>>
>>
>>
>> I am wondering whether you are working on it. Or you got in troubles. If
>> you have any suggestions such as converting sdt file into other format,
>> please let me know.
>>
>>
>>
>> Regards,
>>
>> Doogie
>>
>>
>>
>> *From:*  ctrueden.wisc at gmail.com [mailto: ctrueden.wisc at gmail.com] *On
>> Behalf Of *Curtis Rueden
>> *Sent:* Wednesday, April 22, 2015 2:03 PM
>> *To:* Oh, Doogie
>> *Cc:*  slim-curve at imagej.net
>> *Subject:* Re: sdt file reading error in SLIM curve
>>
>>
>>
>> Hi Doogie,
>>
>>
>>
>> > Library not on path Unable to load library 'slim-curve-1.0-SNAPSHOT'
>>
>>
>>
>> Thanks for the bug report. I am able to reproduce this issue on my OS X
>> system.
>>
>>
>>
>> I will investigate further and reply back when there is a fix.
>>
>>
>>
>> Regards,
>>
>> Curtis
>>
>>
>>
>> On Fri, Apr 17, 2015 at 1:25 PM, Oh, Doogie < doh at cgr.harvard.edu> wrote:
>>
>>  Dear Curtis,
>>
>>
>>
>> I am trying to load sdt file, but couldn’t get the correct image. Could
>> you diagnose the problems? I attach the sdt file and the loading results.
>>
>>
>>
>> Best regards,
>>
>> Doogie Oh, Ph. D
>>
>> Department of Molecular and Cellular Biology
>>
>> Applied Physics
>>
>> Harvard University
>>
>> 52 Oxford st,
>>
>> Northwest lab building, Room 358
>>
>> Cambridge, MA
>>
>> 02138
>>
>>
>>
>>
>>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://loci.wisc.edu/pipermail/slim-curve/attachments/20150629/8fa76ea0/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Capture.JPG
Type: image/jpeg
Size: 71709 bytes
Desc: not available
URL: <http://loci.wisc.edu/pipermail/slim-curve/attachments/20150629/8fa76ea0/attachment-0001.jpe>